EXist 3.1.0 and shared resources restored

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EXist 3.1.0 and shared resources restored

John Preimonas-2
Hi all,

Did a complete system shutdown and restart. and it looks like it has all come back up. 
Documentation and Fn docs still do NOT work through Dashboard though, but I can get to them through eXist.org website.

Regards,
John

On 10 Mar 2017, at 5:09 pm, [hidden email] wrote:

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Today's Topics:

  1. Now eXist 3.1.0 fails to load (John Preimonas)
  2. Unable to load Shared Resources from Dashboard (John Preimonas)


----------------------------------------------------------------------

Message: 1
Date: Fri, 10 Mar 2017 07:04:04 +0000
From: John Preimonas <[hidden email]>
Subject: [Exist-open] Now eXist 3.1.0 fails to load
To: exist-open <[hidden email]>
Message-ID:
<[hidden email]>

Content-Type: text/plain; charset="us-ascii"

See log report below.
What do I have to do to get this db running again?

2017-03-10 17:00:56,360 [main] INFO  (Configuration.java [<init>]:175) - Reading configuration from file /Applications/eXist-db.app/Contents/Resources/eXist-db/conf.xml
2017-03-10 17:00:56,463 [main] INFO  (Configuration.java [configureStartup]:1280) - Registered StartupTrigger: org.exist.security.GnuCryptoJceProviderStartupTrigger
2017-03-10 17:00:56,464 [main] INFO  (Configuration.java [configureStartup]:1280) - Registered StartupTrigger: org.exist.protocolhandler.URLStreamHandlerStartupTrigger
2017-03-10 17:00:56,465 [main] INFO  (Configuration.java [configureStartup]:1280) - Registered StartupTrigger: org.exist.extensions.exquery.restxq.impl.RestXqStartupTrigger
2017-03-10 17:00:56,475 [main] INFO  (Configuration.java [configureStartup]:1280) - Registered StartupTrigger: org.exist.repo.AutoDeploymentTrigger
2017-03-10 17:00:56,901 [main] ERROR (Configuration.java [lookupModuleClass]:448) - Configuration problem: class not found for module 'http://exist-db.org/xquery/jndi' (ClassNotFoundException); class:'org.exist.xquery.modules.jndi.JNDIModule'; message:'org.exist.xquery.modules.jndi.JNDIModule'
2017-03-10 17:00:56,924 [main] INFO  (Configuration.java [configureValidation]:1490) - Add catalog uri file:///Applications/eXist-db.app/Contents/Resources/eXist-db/webapp//WEB-INF/catalog.xml
2017-03-10 17:00:56,925 [main] INFO  (GrammarPool.java [<init>]:54) - Initializing GrammarPool.
2017-03-10 17:01:38,024 [AWT-EventQueue-0] INFO  (Configuration.java [<init>]:175) - Reading configuration from file /Applications/eXist-db.app/Contents/Resources/eXist-db/conf.xml
2017-03-10 17:01:38,122 [AWT-EventQueue-0] INFO  (Configuration.java [configureStartup]:1280) - Registered StartupTrigger: org.exist.security.GnuCryptoJceProviderStartupTrigger
2017-03-10 17:01:38,124 [AWT-EventQueue-0] INFO  (Configuration.java [configureStartup]:1280) - Registered StartupTrigger: org.exist.protocolhandler.URLStreamHandlerStartupTrigger
2017-03-10 17:01:38,125 [AWT-EventQueue-0] INFO  (Configuration.java [configureStartup]:1280) - Registered StartupTrigger: org.exist.extensions.exquery.restxq.impl.RestXqStartupTrigger
2017-03-10 17:01:38,134 [AWT-EventQueue-0] INFO  (Configuration.java [configureStartup]:1280) - Registered StartupTrigger: org.exist.repo.AutoDeploymentTrigger
2017-03-10 17:01:38,490 [AWT-EventQueue-0] ERROR (Configuration.java [lookupModuleClass]:448) - Configuration problem: class not found for module 'http://exist-db.org/xquery/jndi' (ClassNotFoundException); class:'org.exist.xquery.modules.jndi.JNDIModule'; message:'org.exist.xquery.modules.jndi.JNDIModule'
2017-03-10 17:01:38,507 [AWT-EventQueue-0] INFO  (Configuration.java [configureValidation]:1490) - Add catalog uri file:///Applications/eXist-db.app/Contents/Resources/eXist-db/webapp//WEB-INF/catalog.xml
2017-03-10 17:01:38,508 [AWT-EventQueue-0] INFO  (GrammarPool.java [<init>]:54) - Initializing GrammarPool.
2017-03-10 17:01:39,420 [Thread-3] INFO  (XmlLibraryChecker.java [check]:149) - Looking for a valid Parser...
Checking for Xerces, found version Xerces-J 2.11.0
OK!

2017-03-10 17:01:39,679 [Thread-3] INFO  (XmlLibraryChecker.java [check]:171) - Looking for a valid Transformer...
Checking for Saxon, found version 9.6.0.7
OK!

2017-03-10 17:01:39,680 [Thread-3] INFO  (XmlLibraryChecker.java [check]:183) - Looking for a valid Resolver...
Checking for Resolver, found version XmlResolver 1.2
OK!

2017-03-10 17:01:39,684 [Thread-3] INFO  (XmlLibraryChecker.java [check]:189) - Using parser org.apache.xerces.jaxp.SAXParserImpl$JAXPSAXParser
2017-03-10 17:01:39,687 [Thread-3] INFO  (XmlLibraryChecker.java [check]:190) - Using transformer net.sf.saxon.jaxp.IdentityTransformer
2017-03-10 17:01:39,690 [Thread-3] INFO  (JettyStart.java [run]:133) - Running with Java 1.8.0_121 [Oracle Corporation (Java HotSpot(TM) 64-Bit Server VM) in /Library/Internet Plug-Ins/JavaAppletPlugin.plugin/Contents/Home]
2017-03-10 17:01:39,694 [Thread-3] INFO  (JettyStart.java [run]:140) - Running as user 'johnpreimonas'
2017-03-10 17:01:39,694 [Thread-3] INFO  (JettyStart.java [run]:141) - [eXist Home : /Applications/eXist-db.app/Contents/Resources/eXist-db]
2017-03-10 17:01:39,695 [Thread-3] INFO  (JettyStart.java [run]:142) - [eXist Version : 3.1.0]
2017-03-10 17:01:39,696 [Thread-3] INFO  (JettyStart.java [run]:143) - [eXist Build : 20170307201104]
2017-03-10 17:01:39,696 [Thread-3] INFO  (JettyStart.java [run]:144) - [Git commit : c679cd8]
2017-03-10 17:01:39,696 [Thread-3] INFO  (JettyStart.java [run]:146) - [Operating System : Mac OS X 10.12.3 x86_64]
2017-03-10 17:01:39,697 [Thread-3] INFO  (JettyStart.java [run]:147) - [log4j.configurationFile : file:///Applications/eXist-db.app/Contents/Resources/eXist-db/log4j2.xml]
2017-03-10 17:01:39,697 [Thread-3] INFO  (JettyStart.java [run]:148) - [jetty.home : /Applications/eXist-db.app/Contents/Resources/eXist-db/tools/jetty]
2017-03-10 17:01:39,697 [Thread-3] INFO  (JettyStart.java [run]:149) - [jetty.base : /Applications/eXist-db.app/Contents/Resources/eXist-db/tools/jetty]
2017-03-10 17:01:39,698 [Thread-3] INFO  (JettyStart.java [run]:150) - [jetty configuration : /Applications/eXist-db.app/Contents/Resources/eXist-db/tools/jetty/etc/standard.enabled-jetty-configs]
2017-03-10 17:01:39,699 [Thread-3] INFO  (Configuration.java [<init>]:175) - Reading configuration from file /Applications/eXist-db.app/Contents/Resources/eXist-db/conf.xml
2017-03-10 17:01:39,713 [Thread-3] INFO  (Configuration.java [configureStartup]:1280) - Registered StartupTrigger: org.exist.security.GnuCryptoJceProviderStartupTrigger
2017-03-10 17:01:39,714 [Thread-3] INFO  (Configuration.java [configureStartup]:1280) - Registered StartupTrigger: org.exist.protocolhandler.URLStreamHandlerStartupTrigger
2017-03-10 17:01:39,714 [Thread-3] INFO  (Configuration.java [configureStartup]:1280) - Registered StartupTrigger: org.exist.extensions.exquery.restxq.impl.RestXqStartupTrigger
2017-03-10 17:01:39,714 [Thread-3] INFO  (Configuration.java [configureStartup]:1280) - Registered StartupTrigger: org.exist.repo.AutoDeploymentTrigger
2017-03-10 17:01:39,717 [Thread-3] ERROR (Configuration.java [lookupModuleClass]:448) - Configuration problem: class not found for module 'http://exist-db.org/xquery/jndi' (ClassNotFoundException); class:'org.exist.xquery.modules.jndi.JNDIModule'; message:'org.exist.xquery.modules.jndi.JNDIModule'
2017-03-10 17:01:39,718 [Thread-3] INFO  (Configuration.java [configureValidation]:1490) - Add catalog uri file:///Applications/eXist-db.app/Contents/Resources/eXist-db/webapp//WEB-INF/catalog.xml
2017-03-10 17:01:39,719 [Thread-3] INFO  (GrammarPool.java [<init>]:54) - Initializing GrammarPool.
2017-03-10 17:01:39,720 [Thread-3] INFO  (JettyStart.java [run]:159) - Configuring eXist from /Applications/eXist-db.app/Contents/Resources/eXist-db/conf.xml
2017-03-10 17:01:39,754 [Thread-3] INFO  (BrokerPool.java [<init>]:378) - database instance 'exist' will wait  120,000 ms during shutdown
2017-03-10 17:01:39,755 [Thread-3] INFO  (BrokerPool.java [<init>]:381) - database instance 'exist' is enabled for recovery : true
2017-03-10 17:01:39,755 [Thread-3] INFO  (BrokerPool.java [<init>]:386) - database instance 'exist' will have between 1 and 20 brokers
2017-03-10 17:01:39,755 [Thread-3] INFO  (BrokerPool.java [<init>]:390) - database instance 'exist' will be synchronized every 120,000 ms
2017-03-10 17:01:39,781 [Thread-3] INFO  (DefaultCacheManager.java [<init>]:154) - Cache settings: 262,144k; totalPages: 65,536; maxCacheSize: 58,982; cacheShrinkThreshold: 10,000
2017-03-10 17:01:39,850 [Thread-3] INFO  (XQueryPool.java [configure]:126) - QueryPool: size = 128; maxStackSize = 64; timeout = 120,000; timeoutCheckInterval = 30,000
2017-03-10 17:01:39,864 [Thread-3] INFO  (QuartzSchedulerImpl.java [getQuartzProperties]:117) - Successfully loaded quartz.properties
2017-03-10 17:01:40,424 [Thread-3] INFO  (IndexManager.java [initIndex]:118) - Registered index org.exist.indexing.ngram.NGramIndex as ngram-index
2017-03-10 17:01:41,410 [Thread-3] INFO  (IndexManager.java [initIndex]:118) - Registered index org.exist.indexing.lucene.LuceneIndex as lucene-index
2017-03-10 17:01:41,430 [Thread-3] INFO  (IndexManager.java [initIndex]:118) - Registered index org.exist.indexing.sort.SortIndex as sort-index
2017-03-10 17:01:41,566 [Thread-3] INFO  (IndexManager.java [initIndex]:118) - Registered index org.exist.indexing.range.RangeIndex as range-index
2017-03-10 17:01:41,569 [Thread-3] INFO  (IndexManager.java [initIndex]:118) - Registered index org.exist.storage.structural.NativeStructuralIndex as structural-index
2017-03-10 17:01:41,572 [Thread-3] INFO  (SyncTask.java [configure]:73) - Using DATA_DIR: /Users/johnpreimonas/Library/Application Support/org.exist. Minimal disk space required for database to continue operations: 128mb
2017-03-10 17:01:41,579 [Thread-3] INFO  (SyncTask.java [configure]:76) - Usable space on partition containing DATA_DIR: /Users/johnpreimonas/Library/Application Support/org.exist: 283640mb
2017-03-10 17:01:41,944 [Thread-3] ERROR (Configurator.java [configureByCurrent]:510) - Could not insert configured object
2017-03-10 17:01:41,945 [Thread-3] ERROR (Configurator.java [configureByCurrent]:557) - Field 'managers' must have '@org.exist.config.annotation.ConfigurationFieldClassMask' annotation [manager], skipping instance creation.
2017-03-10 17:01:42,323 [Thread-3] INFO  (NativeBroker.java [sync]:3689) - Memory: 302,080K total; 1,864,192K max; 216,050K free
2017-03-10 17:01:42,324 [Thread-3] INFO  (BTree.java [printStatistics]:2619) - dom.dbx INDEX Buffers occupation : 62% (40 out of 64) Cache efficiency : 99%
2017-03-10 17:01:42,324 [Thread-3] INFO  (DOMFile.java [printStatistics]:1393) - dom.dbx DATA Buffers occupation : 14% (37 out of 256) Cache efficiency : 99%
2017-03-10 17:01:42,325 [Thread-3] INFO  (BTree.java [printStatistics]:2619) - collections.dbx INDEX Buffers occupation : 19% (12 out of 64) Cache efficiency : 89%
2017-03-10 17:01:42,325 [Thread-3] INFO  (BFile.java [printStatistics]:419) - collections.dbx DATA Buffers occupation : 22% (14 out of 64) Cache efficiency : 81%
2017-03-10 17:01:42,326 [Thread-3] INFO  (BTree.java [printStatistics]:2619) - values.dbx INDEX Buffers occupation : 0% (0 out of 64) Cache efficiency : N/A
2017-03-10 17:01:42,326 [Thread-3] INFO  (BFile.java [printStatistics]:419) - values.dbx DATA Buffers occupation : 0% (0 out of 64) Cache efficiency : N/A
2017-03-10 17:01:42,390 [Thread-3] INFO  (GnuCryptoJceProviderStartupTrigger.java [execute]:46) - Registered JCE Security Provider: gnu.crypto.jce.GnuCrypto
2017-03-10 17:01:42,392 [Thread-3] INFO  (URLStreamHandlerStartupTrigger.java [registerStreamHandlerFactory]:61) - Successfully registered eXistURLStreamHandlerFactory.
2017-03-10 17:01:44,426 [Thread-3] INFO  (MimeTable.java [load]:244) - Loading mime table from file /Applications/eXist-db.app/Contents/Resources/eXist-db/mime-types.xml
2017-03-10 17:01:46,207 [Thread-3] WARN  (TransactionManager.java [close]:186) - Transaction was not committed or aborted, auto aborting!
2017-03-10 17:01:46,351 [Thread-3] INFO  (NativeBroker.java [removeXMLResource]:2709) - Removing document build.xml (1218) ...
2017-03-10 17:01:46,404 [Thread-3] INFO  (NativeBroker.java [removeXMLResource]:2709) - Removing document expath-pkg.xml (1220) ...
2017-03-10 17:01:47,064 [Thread-3] INFO  (NativeBroker.java [removeXMLResource]:2709) - Removing document repo.xml (1225) ...
2017-03-10 17:01:47,505 [Thread-3] INFO  (JettyStart.java [run]:183) - [loading jetty configuration : /Applications/eXist-db.app/Contents/Resources/eXist-db/tools/jetty/etc/jetty.xml]
2017-03-10 17:01:47,530 [Thread-3] INFO  (Log.java [initialized]:186) - Logging initialized @15750ms
2017-03-10 17:01:47,655 [Thread-3] INFO  (JettyStart.java [run]:183) - [loading jetty configuration : /Applications/eXist-db.app/Contents/Resources/eXist-db/tools/jetty/etc/jetty-gzip.xml]
2017-03-10 17:01:47,705 [Thread-3] INFO  (JettyStart.java [run]:183) - [loading jetty configuration : /Applications/eXist-db.app/Contents/Resources/eXist-db/tools/jetty/etc/jetty-http.xml]
2017-03-10 17:01:47,755 [Thread-3] INFO  (JettyStart.java [run]:183) - [loading jetty configuration : /Applications/eXist-db.app/Contents/Resources/eXist-db/tools/jetty/etc/jetty-jaas.xml]
2017-03-10 17:01:47,762 [Thread-3] INFO  (JettyStart.java [run]:183) - [loading jetty configuration : /Applications/eXist-db.app/Contents/Resources/eXist-db/tools/jetty/etc/jetty-jmx.xml]
2017-03-10 17:01:47,821 [Thread-3] INFO  (JettyStart.java [run]:183) - [loading jetty configuration : /Applications/eXist-db.app/Contents/Resources/eXist-db/tools/jetty/etc/jetty-requestlog.xml]
2017-03-10 17:01:47,836 [Thread-3] INFO  (JettyStart.java [run]:183) - [loading jetty configuration : /Applications/eXist-db.app/Contents/Resources/eXist-db/tools/jetty/etc/jetty-ssl.xml]
2017-03-10 17:01:47,855 [Thread-3] INFO  (JettyStart.java [run]:183) - [loading jetty configuration : /Applications/eXist-db.app/Contents/Resources/eXist-db/tools/jetty/etc/jetty-ssl-context.xml]
2017-03-10 17:01:47,957 [Thread-3] INFO  (JettyStart.java [run]:183) - [loading jetty configuration : /Applications/eXist-db.app/Contents/Resources/eXist-db/tools/jetty/etc/jetty-https.xml]
2017-03-10 17:01:47,965 [Thread-3] INFO  (JettyStart.java [run]:183) - [loading jetty configuration : /Applications/eXist-db.app/Contents/Resources/eXist-db/tools/jetty/etc/jetty-deploy.xml]
2017-03-10 17:01:48,001 [Thread-3] INFO  (JettyStart.java [run]:183) - [loading jetty configuration : /Applications/eXist-db.app/Contents/Resources/eXist-db/tools/jetty/etc/jetty-plus.xml]
2017-03-10 17:01:48,030 [Thread-3] INFO  (JettyStart.java [run]:183) - [loading jetty configuration : /Applications/eXist-db.app/Contents/Resources/eXist-db/tools/jetty/etc/jetty-annotations.xml]
2017-03-10 17:01:48,037 [Thread-3] INFO  (JettyStart.java [startJetty]:445) - [Starting jetty component : org.eclipse.jetty.server.Server]
2017-03-10 17:01:48,038 [Thread-3] INFO  (JettyStart.java [lifeCycleStarting]:593) - Jetty server starting...
2017-03-10 17:01:48,043 [Thread-3] INFO  (Server.java [doStart]:345) - jetty-9.3.9.v20160517
2017-03-10 17:01:48,077 [Thread-3] INFO  (NCSARequestLog.java [doStart]:230) - Opened /Applications/eXist-db.app/Contents/Resources/eXist-db/tools/jetty/logs/2017_03_10.request.log
2017-03-10 17:01:48,093 [Thread-3] INFO  (ScanningAppProvider.java [doStart]:133) - Deployment monitor [file:///Applications/eXist-db.app/Contents/Resources/eXist-db/tools/jetty/webapps/] at interval 10
2017-03-10 17:01:49,423 [Thread-3] INFO  (AbstractExistHttpServlet.java [getOrCreateBrokerPool]:100) - Database already started. Skipping configuration ...
2017-03-10 17:01:49,424 [Thread-3] INFO  (AbstractExistHttpServlet.java [doGeneralExistServletConfig]:196) - Using default user guest for all unauthorized requests.
2017-03-10 17:01:49,448 [Thread-3] INFO  (XmlLibraryChecker.java [check]:149) - Looking for a valid Parser...
Checking for Xerces, found version Xerces-J 2.11.0
OK!

2017-03-10 17:01:49,451 [Thread-3] INFO  (XmlLibraryChecker.java [check]:171) - Looking for a valid Transformer...
Checking for Saxon, found version 9.6.0.7
OK!

2017-03-10 17:01:49,452 [Thread-3] INFO  (XmlLibraryChecker.java [check]:183) - Looking for a valid Resolver...
Checking for Resolver, found version XmlResolver 1.2
OK!

2017-03-10 17:01:49,457 [Thread-3] INFO  (XmlLibraryChecker.java [check]:189) - Using parser org.apache.xerces.jaxp.SAXParserImpl$JAXPSAXParser
2017-03-10 17:01:49,460 [Thread-3] INFO  (XmlLibraryChecker.java [check]:190) - Using transformer net.sf.saxon.jaxp.IdentityTransformer
2017-03-10 17:01:49,461 [Thread-3] INFO  (ContextHandler.java [doStart]:775) - Started eXist-db Open Source Native XML Database
2017-03-10 17:01:49,581 [Thread-3] INFO  (ContextHandler.java [doStart]:775) - Started o.e.j.w.WebAppContext@5c5059cc{/,file:///Applications/eXist-db.app/Contents/Resources/eXist-db/tools/jetty/webapps/portal/,AVAILABLE}{/portal}
2017-03-10 17:01:49,634 [Thread-3] ERROR (JettyStart.java [run]:313) - ----------------------------------------------------------
2017-03-10 17:01:49,634 [Thread-3] ERROR (JettyStart.java [run]:314) - ERROR: Could not bind to port because Address already in use
2017-03-10 17:01:49,635 [Thread-3] ERROR (JettyStart.java [run]:315) - java.net.BindException: Address already in use
2017-03-10 17:01:49,635 [Thread-3] ERROR (JettyStart.java [run]:316) - ----------------------------------------------------------
2017-03-10 17:01:49,635 [Thread-3] ERROR (JettyStart.java [run]:313) - ----------------------------------------------------------
2017-03-10 17:01:49,635 [Thread-3] ERROR (JettyStart.java [run]:314) - ERROR: Could not bind to port because Address already in use
2017-03-10 17:01:49,636 [Thread-3] ERROR (JettyStart.java [run]:315) - java.net.BindException: Address already in use
2017-03-10 17:01:49,636 [Thread-3] ERROR (JettyStart.java [run]:316) - ----------------------------------------------------------




------------------------------

Message: 2
Date: Fri, 10 Mar 2017 06:53:29 +0000
From: John Preimonas <[hidden email]>
Subject: [Exist-open] Unable to load Shared Resources from Dashboard
To: exist-open <[hidden email]>
Message-ID:
<[hidden email]>

Content-Type: text/plain; charset="utf-8"

Hi,

Seeing as I cannot get Documentation to function from the Dashboard, I have tried, unsuccessfully, to load previous version, all without success.
So then I thought to remove and reload Shared Resources library and see if that got everthing working again. Deleted 0.4.0, then went into Package Manager to reload it. And guess what? The load failed!!! All I got was the message, ?Unknown Error:? (see screenshot attached).
Now what do I do? I have no shared resource.


Still not happy.
John Preimonas
[cid:[hidden email]]
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Announcing the Oxford Dictionaries API! The API offers world-renowned
dictionary content that is easy and intuitive to access. Sign up for an
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projects. Get started today and enter our developer competition.
http://sdm.link/oxford
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