Using the exist-sparql module

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Using the exist-sparql module

wsalesky
Hi All, 
My project is working on integrating an RDF triple store into our eXist app, I would love to be able to use the exist-sparql module (https://github.com/ljo/exist-sparql) for this but have run into some problems installing it on linux. 

I have the module running on my local (Mac OS Sierra) eXist installation, installed using the package manger. 

However on my linux installation when I run a sparql query I get a 'Call to undeclared function sparql:query()' 

Has anyone installed this successfully on linux? Any tips would be greatly appreciated. 


eXist version 3.1
Location of installed jar files (installed using the package manger): 

./webapp/WEB-INF/data/expathrepo/sparql-0.1-SNAPSHOT/content/exist-sparql-0.1-SNAPSHOT-jar-with-dependencies.jar

./webapp/WEB-INF/data/expathrepo/sparql-0.1-SNAPSHOT/content/exist-sparql-0.1-SNAPSHOT.jar

./webapp/WEB-INF/data/expathrepo/sparql-0.1/content/exist-sparql-0.1-SNAPSHOT-jar-with-dependencies.jar

./webapp/WEB-INF/data/expathrepo/sparql-0.1/content/exist-sparql-0.1-SNAPSHOT.jar



Thanks. 
-Winona


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Re: Using the exist-sparql module

Adam Retter
It looks like the sparql module has not been registered with eXist. If you installed via a .xar it should have been done automatically. Do you see anything interesting at install/startup time in exist.log?

On 5 June 2017 at 10:29, Winona Salesky <[hidden email]> wrote:
Hi All, 
My project is working on integrating an RDF triple store into our eXist app, I would love to be able to use the exist-sparql module (https://github.com/ljo/exist-sparql) for this but have run into some problems installing it on linux. 

I have the module running on my local (Mac OS Sierra) eXist installation, installed using the package manger. 

However on my linux installation when I run a sparql query I get a 'Call to undeclared function sparql:query()' 

Has anyone installed this successfully on linux? Any tips would be greatly appreciated. 


eXist version 3.1
Location of installed jar files (installed using the package manger): 

./webapp/WEB-INF/data/expathrepo/sparql-0.1-SNAPSHOT/content/exist-sparql-0.1-SNAPSHOT-jar-with-dependencies.jar

./webapp/WEB-INF/data/expathrepo/sparql-0.1-SNAPSHOT/content/exist-sparql-0.1-SNAPSHOT.jar

./webapp/WEB-INF/data/expathrepo/sparql-0.1/content/exist-sparql-0.1-SNAPSHOT-jar-with-dependencies.jar

./webapp/WEB-INF/data/expathrepo/sparql-0.1/content/exist-sparql-0.1-SNAPSHOT.jar



Thanks. 
-Winona


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Re: Using the exist-sparql module

wsalesky
It does look like the module has not been registered with eXist. I see the following in the log file:

2017-06-04 20:01:33,396 [qtp1066582857-40635] WARN  (XQueryContext.java [initBuiltInModule]:1671) - module class org.exist.xquery.modules.rdf.SparqlModule not found. Skipping... 
2017-06-04 20:01:33,402 [qtp1066582857-40822] WARN  (XQueryContext.java [initBuiltInModule]:1671) - module class org.exist.xquery.modules.rdf.SparqlModule not found. Skipping... 
2017-06-04 20:01:33,607 [qtp1066582857-40627] WARN  (XQueryContext.java [initBuiltInModule]:1671) - module class org.exist.xquery.modules.rdf.SparqlModule not found. Skipping... 
2017-06-04 20:01:36,526 [qtp1066582857-40831] WARN  (XQueryContext.java [initBuiltInModule]:1671) - module class org.exist.xquery.modules.rdf.SparqlModule not found. Skipping... 
2017-06-04 20:01:36,527 [qtp1066582857-40831] ERROR (XQueryServlet.java [process]:534) - Cannot compile xquery: err:XPST0017 Call to undeclared function: sparql:query [at line 9, column 8, 


-Winona


On Mon, Jun 5, 2017 at 11:16 AM, Adam Retter <[hidden email]> wrote:
It looks like the sparql module has not been registered with eXist. If you installed via a .xar it should have been done automatically. Do you see anything interesting at install/startup time in exist.log?

On 5 June 2017 at 10:29, Winona Salesky <[hidden email]> wrote:
Hi All, 
My project is working on integrating an RDF triple store into our eXist app, I would love to be able to use the exist-sparql module (https://github.com/ljo/exist-sparql) for this but have run into some problems installing it on linux. 

I have the module running on my local (Mac OS Sierra) eXist installation, installed using the package manger. 

However on my linux installation when I run a sparql query I get a 'Call to undeclared function sparql:query()' 

Has anyone installed this successfully on linux? Any tips would be greatly appreciated. 


eXist version 3.1
Location of installed jar files (installed using the package manger): 

./webapp/WEB-INF/data/expathrepo/sparql-0.1-SNAPSHOT/content/exist-sparql-0.1-SNAPSHOT-jar-with-dependencies.jar

./webapp/WEB-INF/data/expathrepo/sparql-0.1-SNAPSHOT/content/exist-sparql-0.1-SNAPSHOT.jar

./webapp/WEB-INF/data/expathrepo/sparql-0.1/content/exist-sparql-0.1-SNAPSHOT-jar-with-dependencies.jar

./webapp/WEB-INF/data/expathrepo/sparql-0.1/content/exist-sparql-0.1-SNAPSHOT.jar



Thanks. 
-Winona


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Re: Using the exist-sparql module

Adam Retter
Okay so it looks like the registration entry is present but it can't find the actual java class. If you look inside those Jar files that you mentioned, using a zip tool, do you see any files like:

org/exist/xquery/modules/rdf/SparqlModule.class

On 5 June 2017 at 11:35, Winona Salesky <[hidden email]> wrote:
It does look like the module has not been registered with eXist. I see the following in the log file:

2017-06-04 20:01:33,396 [qtp1066582857-40635] WARN  (XQueryContext.java [initBuiltInModule]:1671) - module class org.exist.xquery.modules.rdf.SparqlModule not found. Skipping... 
2017-06-04 20:01:33,402 [qtp1066582857-40822] WARN  (XQueryContext.java [initBuiltInModule]:1671) - module class org.exist.xquery.modules.rdf.SparqlModule not found. Skipping... 
2017-06-04 20:01:33,607 [qtp1066582857-40627] WARN  (XQueryContext.java [initBuiltInModule]:1671) - module class org.exist.xquery.modules.rdf.SparqlModule not found. Skipping... 
2017-06-04 20:01:36,526 [qtp1066582857-40831] WARN  (XQueryContext.java [initBuiltInModule]:1671) - module class org.exist.xquery.modules.rdf.SparqlModule not found. Skipping... 
2017-06-04 20:01:36,527 [qtp1066582857-40831] ERROR (XQueryServlet.java [process]:534) - Cannot compile xquery: err:XPST0017 Call to undeclared function: sparql:query [at line 9, column 8, 


-Winona


On Mon, Jun 5, 2017 at 11:16 AM, Adam Retter <[hidden email]> wrote:
It looks like the sparql module has not been registered with eXist. If you installed via a .xar it should have been done automatically. Do you see anything interesting at install/startup time in exist.log?

On 5 June 2017 at 10:29, Winona Salesky <[hidden email]> wrote:
Hi All, 
My project is working on integrating an RDF triple store into our eXist app, I would love to be able to use the exist-sparql module (https://github.com/ljo/exist-sparql) for this but have run into some problems installing it on linux. 

I have the module running on my local (Mac OS Sierra) eXist installation, installed using the package manger. 

However on my linux installation when I run a sparql query I get a 'Call to undeclared function sparql:query()' 

Has anyone installed this successfully on linux? Any tips would be greatly appreciated. 


eXist version 3.1
Location of installed jar files (installed using the package manger): 

./webapp/WEB-INF/data/expathrepo/sparql-0.1-SNAPSHOT/content/exist-sparql-0.1-SNAPSHOT-jar-with-dependencies.jar

./webapp/WEB-INF/data/expathrepo/sparql-0.1-SNAPSHOT/content/exist-sparql-0.1-SNAPSHOT.jar

./webapp/WEB-INF/data/expathrepo/sparql-0.1/content/exist-sparql-0.1-SNAPSHOT-jar-with-dependencies.jar

./webapp/WEB-INF/data/expathrepo/sparql-0.1/content/exist-sparql-0.1-SNAPSHOT.jar



Thanks. 
-Winona


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eXist Developer
{ United Kingdom }
[hidden email]
irc://irc.freenode.net/existdb

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Re: Using the exist-sparql module

Adam Retter
Okay so I tried to build the module myself and see what is happening. It seems the build system doesn't really work, I guess LJO must have done quite some manual steps too!

Anyway, I decided to fix it, the PR is here: https://github.com/ljo/exist-sparql/pull/3

In the meantime I have uploaded a new XAR for you guys to test here: http://static.adamretter.org.uk/exist-sparql-0.1-SNAPSHOT.xar

On 5 June 2017 at 11:58, Adam Retter <[hidden email]> wrote:
Okay so it looks like the registration entry is present but it can't find the actual java class. If you look inside those Jar files that you mentioned, using a zip tool, do you see any files like:

org/exist/xquery/modules/rdf/SparqlModule.class

On 5 June 2017 at 11:35, Winona Salesky <[hidden email]> wrote:
It does look like the module has not been registered with eXist. I see the following in the log file:

2017-06-04 20:01:33,396 [qtp1066582857-40635] WARN  (XQueryContext.java [initBuiltInModule]:1671) - module class org.exist.xquery.modules.rdf.SparqlModule not found. Skipping... 
2017-06-04 20:01:33,402 [qtp1066582857-40822] WARN  (XQueryContext.java [initBuiltInModule]:1671) - module class org.exist.xquery.modules.rdf.SparqlModule not found. Skipping... 
2017-06-04 20:01:33,607 [qtp1066582857-40627] WARN  (XQueryContext.java [initBuiltInModule]:1671) - module class org.exist.xquery.modules.rdf.SparqlModule not found. Skipping... 
2017-06-04 20:01:36,526 [qtp1066582857-40831] WARN  (XQueryContext.java [initBuiltInModule]:1671) - module class org.exist.xquery.modules.rdf.SparqlModule not found. Skipping... 
2017-06-04 20:01:36,527 [qtp1066582857-40831] ERROR (XQueryServlet.java [process]:534) - Cannot compile xquery: err:XPST0017 Call to undeclared function: sparql:query [at line 9, column 8, 


-Winona


On Mon, Jun 5, 2017 at 11:16 AM, Adam Retter <[hidden email]> wrote:
It looks like the sparql module has not been registered with eXist. If you installed via a .xar it should have been done automatically. Do you see anything interesting at install/startup time in exist.log?

On 5 June 2017 at 10:29, Winona Salesky <[hidden email]> wrote:
Hi All, 
My project is working on integrating an RDF triple store into our eXist app, I would love to be able to use the exist-sparql module (https://github.com/ljo/exist-sparql) for this but have run into some problems installing it on linux. 

I have the module running on my local (Mac OS Sierra) eXist installation, installed using the package manger. 

However on my linux installation when I run a sparql query I get a 'Call to undeclared function sparql:query()' 

Has anyone installed this successfully on linux? Any tips would be greatly appreciated. 


eXist version 3.1
Location of installed jar files (installed using the package manger): 

./webapp/WEB-INF/data/expathrepo/sparql-0.1-SNAPSHOT/content/exist-sparql-0.1-SNAPSHOT-jar-with-dependencies.jar

./webapp/WEB-INF/data/expathrepo/sparql-0.1-SNAPSHOT/content/exist-sparql-0.1-SNAPSHOT.jar

./webapp/WEB-INF/data/expathrepo/sparql-0.1/content/exist-sparql-0.1-SNAPSHOT-jar-with-dependencies.jar

./webapp/WEB-INF/data/expathrepo/sparql-0.1/content/exist-sparql-0.1-SNAPSHOT.jar



Thanks. 
-Winona


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eXist Developer
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[hidden email]
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{ United Kingdom }
[hidden email]
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Re: Using the exist-sparql module

wsalesky
Adam, 
There is a requirement for eXistdb 3.2.0 any chance we can get one that works with 3.1.0?
-Winona


On Tue, Jun 27, 2017 at 2:51 PM, Adam Retter <[hidden email]> wrote:
Okay so I tried to build the module myself and see what is happening. It seems the build system doesn't really work, I guess LJO must have done quite some manual steps too!

Anyway, I decided to fix it, the PR is here: https://github.com/ljo/exist-sparql/pull/3

In the meantime I have uploaded a new XAR for you guys to test here: http://static.adamretter.org.uk/exist-sparql-0.1-SNAPSHOT.xar

On 5 June 2017 at 11:58, Adam Retter <[hidden email]> wrote:
Okay so it looks like the registration entry is present but it can't find the actual java class. If you look inside those Jar files that you mentioned, using a zip tool, do you see any files like:

org/exist/xquery/modules/rdf/SparqlModule.class

On 5 June 2017 at 11:35, Winona Salesky <[hidden email]> wrote:
It does look like the module has not been registered with eXist. I see the following in the log file:

2017-06-04 20:01:33,396 [qtp1066582857-40635] WARN  (XQueryContext.java [initBuiltInModule]:1671) - module class org.exist.xquery.modules.rdf.SparqlModule not found. Skipping... 
2017-06-04 20:01:33,402 [qtp1066582857-40822] WARN  (XQueryContext.java [initBuiltInModule]:1671) - module class org.exist.xquery.modules.rdf.SparqlModule not found. Skipping... 
2017-06-04 20:01:33,607 [qtp1066582857-40627] WARN  (XQueryContext.java [initBuiltInModule]:1671) - module class org.exist.xquery.modules.rdf.SparqlModule not found. Skipping... 
2017-06-04 20:01:36,526 [qtp1066582857-40831] WARN  (XQueryContext.java [initBuiltInModule]:1671) - module class org.exist.xquery.modules.rdf.SparqlModule not found. Skipping... 
2017-06-04 20:01:36,527 [qtp1066582857-40831] ERROR (XQueryServlet.java [process]:534) - Cannot compile xquery: err:XPST0017 Call to undeclared function: sparql:query [at line 9, column 8, 


-Winona


On Mon, Jun 5, 2017 at 11:16 AM, Adam Retter <[hidden email]> wrote:
It looks like the sparql module has not been registered with eXist. If you installed via a .xar it should have been done automatically. Do you see anything interesting at install/startup time in exist.log?

On 5 June 2017 at 10:29, Winona Salesky <[hidden email]> wrote:
Hi All, 
My project is working on integrating an RDF triple store into our eXist app, I would love to be able to use the exist-sparql module (https://github.com/ljo/exist-sparql) for this but have run into some problems installing it on linux. 

I have the module running on my local (Mac OS Sierra) eXist installation, installed using the package manger. 

However on my linux installation when I run a sparql query I get a 'Call to undeclared function sparql:query()' 

Has anyone installed this successfully on linux? Any tips would be greatly appreciated. 


eXist version 3.1
Location of installed jar files (installed using the package manger): 

./webapp/WEB-INF/data/expathrepo/sparql-0.1-SNAPSHOT/content/exist-sparql-0.1-SNAPSHOT-jar-with-dependencies.jar

./webapp/WEB-INF/data/expathrepo/sparql-0.1-SNAPSHOT/content/exist-sparql-0.1-SNAPSHOT.jar

./webapp/WEB-INF/data/expathrepo/sparql-0.1/content/exist-sparql-0.1-SNAPSHOT-jar-with-dependencies.jar

./webapp/WEB-INF/data/expathrepo/sparql-0.1/content/exist-sparql-0.1-SNAPSHOT.jar



Thanks. 
-Winona


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eXist Developer
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[hidden email]
irc://irc.freenode.net/existdb



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eXist Developer
{ United Kingdom }
[hidden email]
irc://irc.freenode.net/existdb


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Re: Using the exist-sparql module

Joe Wicentowski
In reply to this post by Adam Retter
Hi Adam,

Many thanks for looking into this!  I successfully installed the
pre-built package you provided into the current 3.3.0-DEVELOP
(c018bd44b), and the sample code from the README.md file (with the
fixes from my as-of-yet unmerged PR,
https://github.com/ljo/exist-sparql/pull/1) successfully ran and
returned the expected results.  The only strange thing is that I
expected the app's files to be deposited into /db/apps/exist-sparql,
but there's no trace of them there.  There was no accompanying warning
or error in exist.log or in expathrepo.log.  My only guess is that the
expathrepo installer properly handled the jars, but perhaps, for some
reason, choked on the version number in expath-pkg.xml (<package
version="0.1-SNAPSHOT" />) -- something which would've caused the
package to fail to deposit its assets into /db/apps.  That said, to
work, the app only needs the jars to be registered (and conf.xml to
modified as stated in the package's README.md file), so for users of
3.2+, you've restored the app to working status!

Thanks again,
Joe


On Tue, Jun 27, 2017 at 2:51 PM, Adam Retter <[hidden email]> wrote:

> Okay so I tried to build the module myself and see what is happening. It
> seems the build system doesn't really work, I guess LJO must have done quite
> some manual steps too!
>
> Anyway, I decided to fix it, the PR is here:
> https://github.com/ljo/exist-sparql/pull/3
>
> In the meantime I have uploaded a new XAR for you guys to test here:
> http://static.adamretter.org.uk/exist-sparql-0.1-SNAPSHOT.xar
>
> On 5 June 2017 at 11:58, Adam Retter <[hidden email]> wrote:
>>
>> Okay so it looks like the registration entry is present but it can't find
>> the actual java class. If you look inside those Jar files that you
>> mentioned, using a zip tool, do you see any files like:
>>
>> org/exist/xquery/modules/rdf/SparqlModule.class
>>
>> On 5 June 2017 at 11:35, Winona Salesky <[hidden email]> wrote:
>>>
>>> It does look like the module has not been registered with eXist. I see
>>> the following in the log file:
>>>
>>> 2017-06-04 20:01:33,396 [qtp1066582857-40635] WARN  (XQueryContext.java
>>> [initBuiltInModule]:1671) - module class
>>> org.exist.xquery.modules.rdf.SparqlModule not found. Skipping...
>>> 2017-06-04 20:01:33,402 [qtp1066582857-40822] WARN  (XQueryContext.java
>>> [initBuiltInModule]:1671) - module class
>>> org.exist.xquery.modules.rdf.SparqlModule not found. Skipping...
>>> 2017-06-04 20:01:33,607 [qtp1066582857-40627] WARN  (XQueryContext.java
>>> [initBuiltInModule]:1671) - module class
>>> org.exist.xquery.modules.rdf.SparqlModule not found. Skipping...
>>> 2017-06-04 20:01:36,526 [qtp1066582857-40831] WARN  (XQueryContext.java
>>> [initBuiltInModule]:1671) - module class
>>> org.exist.xquery.modules.rdf.SparqlModule not found. Skipping...
>>> 2017-06-04 20:01:36,527 [qtp1066582857-40831] ERROR (XQueryServlet.java
>>> [process]:534) - Cannot compile xquery: err:XPST0017 Call to undeclared
>>> function: sparql:query [at line 9, column 8,
>>>
>>>
>>> -Winona
>>>
>>>
>>> On Mon, Jun 5, 2017 at 11:16 AM, Adam Retter <[hidden email]> wrote:
>>>>
>>>> It looks like the sparql module has not been registered with eXist. If
>>>> you installed via a .xar it should have been done automatically. Do you see
>>>> anything interesting at install/startup time in exist.log?
>>>>
>>>> On 5 June 2017 at 10:29, Winona Salesky <[hidden email]> wrote:
>>>>>
>>>>> Hi All,
>>>>> My project is working on integrating an RDF triple store into our eXist
>>>>> app, I would love to be able to use the exist-sparql module
>>>>> (https://github.com/ljo/exist-sparql) for this but have run into some
>>>>> problems installing it on linux.
>>>>>
>>>>> I have the module running on my local (Mac OS Sierra) eXist
>>>>> installation, installed using the package manger.
>>>>>
>>>>> However on my linux installation when I run a sparql query I get a
>>>>> 'Call to undeclared function sparql:query()'
>>>>>
>>>>> Has anyone installed this successfully on linux? Any tips would be
>>>>> greatly appreciated.
>>>>>
>>>>>
>>>>> eXist version 3.1
>>>>> Location of installed jar files (installed using the package manger):
>>>>>
>>>>>
>>>>> ./webapp/WEB-INF/data/expathrepo/sparql-0.1-SNAPSHOT/content/exist-sparql-0.1-SNAPSHOT-jar-with-dependencies.jar
>>>>>
>>>>>
>>>>> ./webapp/WEB-INF/data/expathrepo/sparql-0.1-SNAPSHOT/content/exist-sparql-0.1-SNAPSHOT.jar
>>>>>
>>>>>
>>>>> ./webapp/WEB-INF/data/expathrepo/sparql-0.1/content/exist-sparql-0.1-SNAPSHOT-jar-with-dependencies.jar
>>>>>
>>>>>
>>>>> ./webapp/WEB-INF/data/expathrepo/sparql-0.1/content/exist-sparql-0.1-SNAPSHOT.jar
>>>>>
>>>>>
>>>>>
>>>>> Thanks.
>>>>> -Winona
>>>>>
>>>>>
>>>>>
>>>>> ------------------------------------------------------------------------------
>>>>> Check out the vibrant tech community on one of the world's most
>>>>> engaging tech sites, Slashdot.org! http://sdm.link/slashdot
>>>>> _______________________________________________
>>>>> Exist-open mailing list
>>>>> [hidden email]
>>>>> https://lists.sourceforge.net/lists/listinfo/exist-open
>>>>>
>>>>
>>>>
>>>>
>>>> --
>>>> Adam Retter
>>>>
>>>> eXist Developer
>>>> { United Kingdom }
>>>> [hidden email]
>>>> irc://irc.freenode.net/existdb
>>>
>>>
>>
>>
>>
>> --
>> Adam Retter
>>
>> eXist Developer
>> { United Kingdom }
>> [hidden email]
>> irc://irc.freenode.net/existdb
>
>
>
>
> --
> Adam Retter
>
> eXist Developer
> { United Kingdom }
> [hidden email]
> irc://irc.freenode.net/existdb
>
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Re: Using the exist-sparql module

Adam Retter
The only strange thing is that I
expected the app's files to be deposited into /db/apps/exist-sparql,
but there's no trace of them there.  There was no accompanying warning
or error in exist.log or in expathrepo.log.  My only guess is that the
expathrepo installer properly handled the jars, but perhaps, for some
reason, choked on the version number in expath-pkg.xml (<package
version="0.1-SNAPSHOT" />) -- something which would've caused the
package to fail to deposit its assets into /db/apps.

Interesting! I don't see anything immediately wrong with the actual .xar package itself, I just compared it against the previous one that Leif published. It's very disappointing there is nothing in the logs, I will need to debug this sometime, but I can't do that just yet. Could you open an issue so it is not forgotten?


--
Adam Retter

eXist Developer
{ United Kingdom }
[hidden email]
irc://irc.freenode.net/existdb

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